Effects of biotic and abiotic factors on biofilm growth dynamics and their heterogeneous response to antibiotic challenge

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dc.contributor.authorMachineni, Lakshmien_US
dc.date.accessioned2020-11-18T10:14:24Z
dc.date.available2020-11-18T10:14:24Z
dc.date.issued2020-01
dc.description.abstractWith the emergence of multidrug-resistant ‘superbug’, conventional treatments become obsolete. Quorumquenching (QQ), enzyme-dependent alteration of quorum sensing (QS), is now considered as a promisingantimicrobial therapy because of its potentiality to impede virulence gene expression without resulting ingrowth inhibition and antibiotic resistance. In our study, we intended to compare between two major QQenzyme groups (i.e., AHL lactonases and AHL acylases) in terms of their structural and functional aspects.The amino acid composition-based principal component analysis (PCA) suggested that probably there is nostructural and functional overlapping between the two groups of enzymes as well as within the lactonaseenzymes but the acylases may functionally be affected by one another. In subcellular localization analysis,we also found that most lactonases are cytoplasmic while acylases are periplasmic. Investigation on thesecondary structural features showed random coil dominates over a-helix and b-sheet in all evaluatedenzymes. For structural comparison, the tertiary structures of the selected proteins were modelled andsubmitted to the PMDB database (Accession ID: PM0081007 to PM0081018). Interestingly, sequencealignment revealed the presence of several conserved domains important for functions in both proteingroups. In addition, three amino acid residues, namely aspartic acid, histidine, and isoleucine, were commonin the active sites of all protein models while most frequent ligands were found to be 3C7, FEO, and PAC.Importantly, binding interactions of predicted ligands were similar to that of native QS signal molecules.Furthermore, hydrogen bonds analysis suggested six proteins are more stable than others. We believe thatthe knowledge of this comparative study could be useful for further research in the development of QSbased universal antibacterial strategiesen_US
dc.identifier.affiliationsIICT, Hyderabad, Indiaen_US
dc.identifier.citationMachineni Lakshmi. Effects of biotic and abiotic factors on biofilm growth dynamics and their heterogeneous response to antibiotic challenge. Journal of Biosciences. 2020 Jan; : 1-22en_US
dc.identifier.issn0250-5991
dc.identifier.issn0973-7138
dc.identifier.placeIndiaen_US
dc.identifier.urihttps://imsear.searo.who.int/handle/123456789/214341
dc.languageenen_US
dc.publisherIndian Academy of Sciencesen_US
dc.relation.volume45en_US
dc.source.urihttps://dx.doi.org//10.1007/s12038-020-9990-3en_US
dc.subjectBiofilmen_US
dc.subjectheterogeneityen_US
dc.subjectquorum sensingen_US
dc.subjectresistanceen_US
dc.subjectsub-MBECen_US
dc.titleEffects of biotic and abiotic factors on biofilm growth dynamics and their heterogeneous response to antibiotic challengeen_US
dc.typeJournal Articleen_US
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